Biological software developped in Serrano's laboratory

SmartCell Species Moving Examples

Movement XML Code SmartCell File
Diffusion of A inside the cytosol: <listOfSpecies>
   <species id="A">
      <listOfDiffusions>
         <diffusion fromCompartment="cytosol" toCompartment="cytosol" D="0.5" accuracy="low" activeTransport="false"/>
      </listOfDiffusions>
   </species>
<listOfSpecies>
diffusion_inside_cytosol.xml
Diffusion of A from the cytosol to the nucleus: <listOfSpecies>
   <species id="A">
      <listOfDiffusions>
         <diffusion fromCompartment="cytosol" toCompartment="nucleus" D="0.5" accuracy="low" activeTransport="false"/>
      </listOfDiffusions>
   </species>
<listOfSpecies>
diffusion_from_cytosol_to_nucleus.xml
Active transport of A from the cytosol to the nucleus: <listOfSpecies>
   <species id="A">
      <listOfDiffusions>
         <diffusion fromCompartment="cytosol" toCompartment="nucleus" D="0.5" accuracy="low" activeTransport="true"/>
      </listOfDiffusions>
   </species>
<listOfSpecies>
activetransport_from_cytosol_to_nucleus.xml